basico
- basico package
- Submodules
- basico.array_tools module
- basico.biomodels module
- basico.compartment_array_tools module
- basico.jws_online module
- basico.model_info module
T
add_amount_expressions()
add_compartment()
add_default_plot()
add_equation()
add_event()
add_event_assignment()
add_function()
add_parameter()
add_plot()
add_reaction()
add_report()
add_species()
as_dict()
assign_report()
get_cn()
get_compartments()
get_default_plot_names()
get_events()
get_functions()
get_jacobian_matrix()
get_miriam_annotation()
get_miriam_resources()
get_model_units()
get_notes()
get_parameters()
get_plot_dict()
get_plots()
get_reaction_mapping()
get_reaction_parameters()
get_reactions()
get_reduced_jacobian_matrix()
get_reduced_stoichiometry_matrix()
get_report_dict()
get_reports()
get_scheduled_tasks()
get_species()
get_stoichiometry_matrix()
get_task_settings()
get_time_unit()
get_value()
have_miriam_resources()
remove_amount_expressions()
remove_compartment()
remove_event()
remove_function()
remove_parameter()
remove_plot()
remove_reaction()
remove_report()
remove_report_from_task()
remove_species()
remove_user_defined_functions()
set_compartment()
set_element_name()
set_event()
set_miriam_annotation()
set_model_name()
set_model_unit()
set_notes()
set_parameters()
set_plot_curves()
set_plot_dict()
set_reaction()
set_reaction_mapping()
set_reaction_parameters()
set_report_dict()
set_scheduled_tasks()
set_species()
set_task_settings()
set_time_unit()
set_value()
update_miriam_resources()
- basico.model_io module
create_datamodel()
get_current_model()
get_examples()
get_model_from_dict_or_default()
get_num_loaded_models()
load_biomodel()
load_example()
load_model()
load_model_from_string()
load_model_from_url()
new_model()
open_copasi()
overview()
print_model()
remove_datamodel()
save_model()
save_model_and_data()
save_model_to_string()
set_current_model()
- basico.task_parameterestimation module
PE
PE.CURRENT_SOLUTION
PE.DIFFERENTIAL_EVOLUTION
PE.EVOLUTIONARY_PROGRAMMING
PE.EVOLUTIONARY_STRATEGY_SRES
PE.GENETIC_ALGORITHM
PE.GENETIC_ALGORITHM_SR
PE.HOOKE_JEEVES
PE.LEVENBERG_MARQUARDT
PE.NELDER_MEAD
PE.NL2SOL
PE.PARTICLE_SWARM
PE.PRAXIS
PE.RANDOM_SEARCH
PE.SCATTER_SEARCH
PE.SIMULATED_ANNEALING
PE.STEEPEST_DESCENT
PE.TRUNCATED_NEWTON
PE.all_method_names()
PE.from_enum()
PE.to_enum()
add_experiment()
add_experiment_from_dict()
get_data_from_experiment()
get_experiment()
get_experiment_data_from_model()
get_experiment_dict()
get_experiment_filenames()
get_experiment_mapping()
get_experiment_names()
get_fit_item_template()
get_fit_parameters()
get_fit_statistic()
get_parameters_solution()
get_simulation_results()
load_experiments_from_dict()
load_experiments_from_yaml()
num_experiment_files()
num_validations_files()
plot_per_dependent_variable()
plot_per_experiment()
prune_simulation_results()
remove_experiments()
remove_fit_parameters()
run_parameter_estimation()
save_experiments_to_dict()
save_experiments_to_yaml()
set_fit_parameters()
- basico.task_steadystate module
- basico.task_timecourse module
- basico.task_scan module
- basico.task_optimization module