basiCO

Getting started

  • Getting Started

Examples

  • Accessing Models from the database
  • Creating and simulating a simple model
  • Getting and setting reaction parameters and reactions
  • Editing reaction kinetics
  • Parameter Estimation
  • Parameter estimation setup
  • Parameter Estimation (import / export)
  • Optimization
  • Simple simulations and plotting
  • Simulating a model with basico
  • Simulating with custom results
  • Parameter Scans
  • Sensitivity Analysis
  • Working with arrays of Compartments
  • Using callbacks
  • Working with Plots
  • Working with Reports
  • Working with SBML Ids
  • Working with Annotations
  • Working with ipyparallel
  • Working with PEtab
  • Model Selection
  • Working with Parameter Sets
  • Profile likelihood
  • Metabolic Control Analysis
  • Working with Widgets
  • Retrieving all Task / Method Settings
  • Linear Noise Approximation

API

  • basico
basiCO
  • Search

© Copyright 2026, Frank T. Bergmann.

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